With the vigorous development of China's construction industry, the scale of factory construction continues to expand, and the requirements for the management of the entire construction process on the construction site are also increasing. Starting from an overview of factory construction, this article deeply analyzes the challenges faced in the entire process management of factory construction sites. Based on this, a series of targeted management strategies are proposed, including building a digital information management platform, optimizing resource allocation plans, and establishing a sound construction environment response mechanism. The results show that implementing the above management strategies can improve the overall management level of factory construction sites and contribute to the high-quality development of the construction industry.